Last updated: 2018-08-03

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• ✔ R Markdown file: up-to-date

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• ✔ Repository version: 2689835

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  Ignored files:
      Ignored:    .DS_Store
      Ignored:    .Rhistory
      Ignored:    .Rproj.user/
      Ignored:    data/.DS_Store
      Ignored:    inst/.DS_Store
      Ignored:    inst/doc/.DS_Store
      Ignored:    vignettes/.DS_Store
  
  Untracked files:
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      Untracked:  docs/figure/Brain_scRNASeq_neuron_vs_oligodendrocyte_single_run.Rmd/
      Untracked:  docs/figure/hidden_heterogeneity_glioblastoma.Rmd/
      Untracked:  docs/figure/tSNE_post_IA-SVA_3celltypes.Rmd/
      Untracked:  docs/figure/tSNE_post_IA-SVA_Xin_Islets.Rmd/
      Untracked:  output/Brain_scRNASeq_neuron_astro_190_cells.pdf
      Untracked:  output/Brain_scRNASeq_neuron_astro_190_cells_run_time.pdf
      Untracked:  output/CC_genes.long.txt
      Untracked:  output/CC_genes.short.txt
      Untracked:  output/Clustering_analyses_figure3_sv1.pdf
      Untracked:  output/Clustering_analyses_figure4_Xin.pdf
      Untracked:  output/Clustering_analyses_figure4_Xin_sv1.pdf
      Untracked:  output/FigureS11_Xin_Islets_AllCells_IASVA_Markers_pheatmap.pdf
      Untracked:  output/Lawlor_Islets_3Cells_CellView_Seurat_FigS.pdf
      Untracked:  output/Lawlor_Islets_3Cells_IASVA_SV1SV3_rsqcutoff0.3_pheatmap_iasvaV0.95_Figure4_C.pdf
      Untracked:  output/Lawlor_Islets_3Cells_IASVA_SV4_rsqcutoff0.3_pheatmap_iasvaV0.95.pdf
      Untracked:  output/Lawlor_Islets_3Cells_IASVA_pairs4SVs_iasvaV0.95_black_FigS6.pdf
      Untracked:  output/Lawlor_Islets_3Cells_IASVA_pairs4SVs_iasvaV0.95_color_FigS6.pdf
      Untracked:  output/Lawlor_Islets_3Cells_SV1_SV3_Cell_Type_Genes_rsqcutoff0.3.txt
      Untracked:  output/Lawlor_Islets_3Cells_SV4_Genes_rsqcutoff0.3.txt
      Untracked:  output/Lawlor_Islets_3Cells_tSNE_IA-SVA_Fig4AB.pdf
      Untracked:  output/Patel_Glioblastoma_MGH30_CellCycle_Figure3ABCD.pdf
      Untracked:  output/Patel_Glioblastoma_MGH30_Cellcycle_SV1_Genes_rsqcutoff0.3.txt
      Untracked:  output/Patel_Glioblastoma_MGH30_Cellcycle_SV1_Genes_rsqcutoff0.4.txt
      Untracked:  output/Patel_Glioblastoma_MGH30_iasva_SV1_genes_rsqcutoff0.3_pheatmap_iasvaV0.95_Figure3F.pdf
      Untracked:  output/Xin_Islets_AllCells_IASVA.pdf
      Untracked:  output/Xin_Islets_AllCells_IASVA_nocolor.pdf
      Untracked:  output/Xin_Islets_AllCells_PCA.pdf
      Untracked:  output/Xin_Islets_AllCells_SV1_Genes_rsqcutoff0.2.txt
      Untracked:  output/Xin_Islets_AllCells_SV1_Genes_rsqcutoff0.3.txt
      Untracked:  output/Xin_Islets_AllCells_SV3_Genes_rsqcutoff0.2.txt
      Untracked:  output/Xin_Islets_AllCells_SV3_Genes_rsqcutoff0.3.txt
      Untracked:  output/Xin_Islets_AllCells_USVA.pdf
      Untracked:  output/Xin_Islets_AllCells_tSNEByKnownFactors_FigureS9.pdf
      Untracked:  output/Xin_Islets_All_demensionality_reduction_Figure4DEFG.pdf
  
  

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Expand here to see past versions:

File	Version	Author	Date	Message
Rmd	b8611a4	dleelab	2018-08-03	licence updated
html	c241b04	dleelab	2018-08-03	added
Rmd	e0cbded	dleelab	2018-07-31	Start workflowr project.

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All source code and software in this repository are made available under the terms of the MIT license.

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This reproducible R Markdown analysis was created with workflowr 1.0.1

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